genomoe information including number of chromosomes, chromosome length, number of loci on each chromosome and mutation rate

In []:
%%file genomeInfo.txt
nChrm 3
chrLength 1.0 1.1 0.9
nLoci 5 4 2
mutRate 0.00000001


map postion for each loci on different chromosomes (1 line each chromosome)

In []:
%%file mapPos.txt
0.1 0.2 0.3 0.4 0.5
0.2 0.7 0.8 0.9
0.5 0.6


haplotypes for all individuals (2 lines each individual)

In [1]:
%%file haplotype.txt
1 1 0 0 1 1 1 0 1 0
0 1 1 1 0 1 0 0 0 1
1 0 0 1 1 1 1 0 1 1
0 1 1 1 1 0 1 1 1 0
1 1 1 0 0 1 0 0 0 1
0 0 1 0 1 1 1 0 0 1
1 1 0 1 0 0 1 1 0 1
0 1 0 0 1 1 1 1 1 1
1 0 1 0 1 1 1 1 1 1
0 1 0 1 0 1 1 1 1 1
1 0 0 0 1 1 1 0 1 1
0 1 1 0 0 1 1 0 1 1
1 1 0 1 1 0 1 0 1 1
0 1 0 0 1 1 1 0 1 1
1 1 0 0 0 1 1 0 1 1
0 1 1 1 1 0 1 0 1 1
1 0 0 0 1 1 1 0 1 0
0 1 0 1 0 1 0 0 1 0
1 1 1 0 1 0 1 0 0 1
1 0 0 0 1 0 1 0 1 1

Writing haplotype1.txt